Model Details

Patient Information for Model: BCM-15115

Patient Information
Clinical Timeline

Color Keys:
 
 Positive
 
 Negative
 
 N/A

Clinical Information at Collection
Clinical Biomarkers/Mutations at Collection
Pathology Information at Collection

Model Information for Model: BCM-15115

Model Details - Initial Implantation of Patient Tissue
Biomarkers & Mutations
Model Details - Acceptable Conditions for Passaging
Mutations (Cancer Gene Census List)

The number of models in this collection with mutations in the listed gene;
may include models that are not publicly available for distribution.
The number of models in this collection with mutations at the listed site;
may include models that are not publicly available for distribution.
GeneChrStartEndRefAltcDNA ChangeCodon ChangeProtein ChangeTVAF Gene Mutation Freq. Site Mutation Freq.Most Severe EffectAll EffectsMutation ImpactTranscript IDClinVar Clinical SignificanceCOSMIC IDgnomAD Non-Cancer AFdbSNP IDGene Mutation Freq.Site Mutation Freq.Transcript IDClinVar Clinical SignificanceCOSMIC IDdbSNP ID
AKAP9chr79202286492022864AAAACc.4004_4006dupaaa/aAACaap.K1335_L1336insQ0.4995035In-frame InsertionIn-frame InsertionMODERATEENST00000356239.8

COSV62337888
rs10644111
5035ENST00000356239.8COSV62337888rs10644111
APOBEC3Bchr223899139038991391TGTc.784delctG/ctp.V262Ffs*420.90161Frameshift MutationFrameshift MutationHIGHENST00000333467.4

COSV59840725
rs368511533
61ENST00000333467.4COSV59840725rs368511533
ARchrX6754531667545316TTGCAGCAc.234_239dupctg/ctGCAGCAgp.Q79_Q80dup0.689483In-frame InsertionIn-frame InsertionMODERATEENST00000374690.9

COSV65953707

483ENST00000374690.9COSV65953707
ARHGEF10chr819093901909390GAc.2063G>AaGc/aAcp.S688N0.405101Missense VariantMissense VariantMODERATEENST00000349830.8
Conflicting_interpretations_of_pathogenicity

0.000818752000rs143290224
101ENST00000349830.8Conflicting_interpretations_of_pathogenicityrs143290224
ARHGEF10Lchr11761936417619365GCGc.862delCtc/tcp.L288Sfs*230.06351Frameshift MutationFrameshift MutationHIGHENST00000361221.8



51ENST00000361221.8
ASXL1chr203243461032434610AGc.1898A>GcAt/cGtp.H633R0.377122Missense VariantMissense VariantMODERATEENST00000375687.10
Benign/Likely_benign

0.000129922000rs201280462
122ENST00000375687.10Benign/Likely_benignrs201280462
ASXL2chr22575006725750067CTc.1489G>AGct/Actp.A497T0.25181Missense VariantMissense VariantMODERATEENST00000435504.9
Benign
COSV55469249
0.004480290000rs192716734
81ENST00000435504.9BenignCOSV55469249rs192716734
ATRXchrX7768247177682471CGc.2785G>CGag/Cagp.E929Q0.7945956Missense VariantMissense VariantMODERATEENST00000373344.10
Benign

rs3088074
5956ENST00000373344.10Benignrs3088074
BCL11Bchr149917492099174920GAc.1916C>TgCg/gTgp.A639V0.68371Missense VariantMissense VariantMODERATEENST00000357195.8



71ENST00000357195.8
CD274chr954630345463034AGc.595A>GAtc/Gtcp.I199V0.98411Missense VariantMissense VariantMODERATEENST00000381577.4


0.000012684500rs1200397607
11ENST00000381577.4rs1200397607
CIITAchr161090907010909070AGc.2702A>GcAg/cGgp.Q901R0.9838584Missense VariantMissense VariantMODERATEENST00000618327.4
Benign

0.983235000000rs7197779
8584ENST00000618327.4Benignrs7197779
CREB3L1chr114630793846307938GAc.454G>AGcc/Accp.A152T0.926122Missense VariantMissense VariantMODERATEENST00000621158.5
Likely_benign
COSV99074497
0.007505540000rs199951144
122ENST00000621158.5Likely_benignCOSV99074497rs199951144
CREB3L2chr7137928167137928170CTGGCc.299_301delaCCAgt/agtp.T100del0.9554949In-frame DeletionIn-frame DeletionMODERATEENST00000330387.11

COSV57791862
rs3217268
4949ENST00000330387.11COSV57791862rs3217268
CSF1Rchr5150061550150061550GAc.1799C>TaCg/aTgp.T600M0.96761Missense VariantMissense VariantMODERATEENST00000286301.7
Likely_benign

0.000696632000rs200788902
61ENST00000286301.7Likely_benignrs200788902
CSMD3chr8112656169112656169TCc.2989A>GAag/Gagp.K997E0.254241Missense VariantMissense VariantMODERATEENST00000297405.10

COSV104624078
0.000701256000rs150862620
241ENST00000297405.10COSV104624078rs150862620
CNV


Histology Information for Model: BCM-15115
There are no histology images for this model.













Metastasis Information for Model: BCM-15115
 
Patient
PDX
Abdomen
Abdominal cavity
Adrenal Gland
Anterosuperior mediastinum
Ascites
Axillary Lymph Node
Bone
Brain
CTC
Chest
Chest wall
Contralateral Breast
Fallopian tubes
Head
Hilar Node
Hip
Kidney
Leg bone
Leptomeninges
Liver
Lung
Lymph Node
Mediastinum
Metastasis Pleura
Neck
None
Other
Ovary
Pancreas
Paratracheal adenopathy
Pericardium
Peritoneal cavity
Peritoneum
Pleura
Pleural cavity
Pleural effusion
Posterior cervical nodes
Pulmonary
Retrocrural Lymph Node
SVC node
Sacral Spine
Skin
Spine
Spleen
Thymus

Patient Treatment Information for Model: BCM-15115

Event IdTreatmentTreatment SettingAge at StartAge at EndDurationClinical ResponsePathologic ResponseReason Stopped
10AnastrazoleNeoadjuvant63.8864.17106 daysResidual DiseaseNot ReportedTreatment Completed
20PaclitaxelAdjuvant64.4264.5547 daysNot ReportedNot ApplicableTreatment Completed
25Radiation Therapy (RT)Adjuvant64.6164.6929 daysNot ReportedNot ApplicableTreatment Completed














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