Model Details

Patient Information for Model: BCM-15051

Patient Information
Clinical Timeline

Color Keys:
 
 Positive
 
 Negative
 
 N/A

Clinical Information at Collection
Clinical Biomarkers/Mutations at Collection
Pathology Information at Collection

Model Information for Model: BCM-15051

Model Details - Initial Implantation of Patient Tissue
Biomarkers & Mutations
Model Details - Acceptable Conditions for Passaging
Mutations (Cancer Gene Census List)

The number of models in this collection with mutations in the listed gene;
may include models that are not publicly available for distribution.
The number of models in this collection with mutations at the listed site;
may include models that are not publicly available for distribution.
GeneChrStartEndRefAltcDNA ChangeCodon ChangeProtein ChangeTVAF Gene Mutation Freq. Site Mutation Freq.Most Severe EffectAll EffectsMutation ImpactTranscript IDClinVar Clinical SignificanceCOSMIC IDgnomAD Non-Cancer AFdbSNP IDGene Mutation Freq.Site Mutation Freq.Transcript IDClinVar Clinical SignificanceCOSMIC IDdbSNP ID
AKAP9chr79202286492022864AAAACc.4004_4006dupaaa/aAACaap.K1335_L1336insQ0.9765035In-frame InsertionIn-frame InsertionMODERATEENST00000356239.8

COSV62337888
rs10644111
5035ENST00000356239.8COSV62337888rs10644111
ARchrX6754651467546514TTGGCc.1418_1420dup-/GGCp.G473dup0.832488In-frame InsertionIn-frame InsertionMODERATEENST00000374690.9

COSV104687717

488ENST00000374690.9COSV104687717
ARNTchr1150817408150817408CTc.1531G>AGac/Aacp.D511N0.39452Missense VariantMissense VariantMODERATEENST00000358595.10
Benign

0.005402390000rs1805133
52ENST00000358595.10Benignrs1805133
ATRXchrX7768247177682471CGc.2785G>CGag/Cagp.E929Q0.3645956Missense VariantMissense VariantMODERATEENST00000373344.10
Benign

rs3088074
5956ENST00000373344.10Benignrs3088074
BAZ1Achr143480024834800248CGc.1104G>CgaG/gaCp.E368D0.9892Missense VariantMissense VariantMODERATEENST00000360310.6


rs1773618060
92ENST00000360310.6rs1773618060
BCRchr222318200023182000CTc.1040C>TtCt/tTtp.S347F0.97872Missense VariantMissense VariantMODERATEENST00000305877.13



72ENST00000305877.13
CIITAchr161090783410907834CTc.2345C>TtCg/tTgp.S782L0.992852Missense VariantMissense VariantMODERATEENST00000618327.4
Benign
COSV60855363
0.062111600000rs13330686
852ENST00000618327.4BenignCOSV60855363rs13330686
CIITAchr161090907010909070AGc.2702A>GcAg/cGgp.Q901R0.9678584Missense VariantMissense VariantMODERATEENST00000618327.4
Benign

0.983235000000rs7197779
8584ENST00000618327.4Benignrs7197779
CIITAchr161090783710907837TCc.2348T>CgTg/gCgp.V783A0.981852Missense VariantMissense VariantMODERATEENST00000618327.4
Benign
COSV60855512
0.062202200000rs13336804
852ENST00000618327.4BenignCOSV60855512rs13336804
CREB3L2chr7137928167137928170CTGGCc.299_301delaCCAgt/agtp.T100del0.3754949In-frame DeletionIn-frame DeletionMODERATEENST00000330387.11

COSV57791862
rs3217268
4949ENST00000330387.11COSV57791862rs3217268
ERCC2chr194535166145351661TGc.2251A>CAag/Cagp.K751Q0.3684846Missense VariantMissense VariantMODERATEENST00000391945.10
Benign/Likely_benign
COSV67266431
0.322955000000rs13181
4846ENST00000391945.10Benign/Likely_benignCOSV67266431rs13181
EZH2chr7148828812148828812CGc.553G>CGac/Cacp.D185H0.2861312Missense VariantMissense VariantMODERATEENST00000320356.7
Benign
COSV57449162
0.078149200000rs2302427
1312ENST00000320356.7BenignCOSV57449162rs2302427
FAM47CchrX3700978337009783GTc.1373G>TcGg/cTgp.R458L0.035147Missense VariantMissense VariantMODERATEENST00000358047.5


0.000123073000rs200849623
147ENST00000358047.5rs200849623
FANCFchr112262482322624823CTc.988G>AGag/Aagp.E330K0.44642Missense VariantMissense VariantMODERATEENST00000327470.6



42ENST00000327470.6
GNASchr205885515758855157CTc.1892C>TtCg/tTgp.S631L0.409152Missense VariantMissense VariantMODERATEENST00000371100.8



152ENST00000371100.8
CNV


Histology Information for Model: BCM-15051

Patient

PDX


Metastasis Information for Model: BCM-15051
 
Patient
PDX
Abdomen
Abdominal cavity
Adrenal Gland
Anterosuperior mediastinum
Ascites
Axillary Lymph Node
Bone
Brain
CTC
Chest
Chest wall
Contralateral Breast
Fallopian tubes
Head
Hilar Node
Hip
Kidney
Leg bone
Leptomeninges
Liver
Lung
Lymph Node
Mediastinum
Metastasis Pleura
Neck
None
Other
Ovary
Pancreas
Paratracheal adenopathy
Pericardium
Peritoneal cavity
Peritoneum
Pleura
Pleural cavity
Pleural effusion
Posterior cervical nodes
Pulmonary
Retrocrural Lymph Node
SVC node
Sacral Spine
Skin
Spine
Spleen
Thymus

Patient Treatment Information for Model: BCM-15051

Event IdTreatmentTreatment SettingAge at StartAge at EndDurationClinical ResponseReason Stopped
6[Paclitaxel, Carboplatin]Neoadjuvant59.4959.7388 daysTreatment Completed
12[Doxorubicin, Cyclophosphamide]Neoadjuvant59.859.8415 daysProgressive DiseaseDisease Progression
16[Radiation Therapy (RT)]Adjuvant60.00.0UnknownCurrent Treatment














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