Model Details

Patient Information for Model: BCM-15029

Patient Information
Clinical Timeline

Color Keys:
 
 Positive
 
 Negative
 
 N/A

Clinical Information at Collection
Clinical Biomarkers/Mutations at Collection
Pathology Information at Collection

Model Information for Model: BCM-15029

Model Details - Initial Implantation of Patient Tissue
Biomarkers & Mutations
Model Details - Acceptable Conditions for Passaging
Mutations (Cancer Gene Census List)

The number of models in this collection with mutations in the listed gene;
may include models that are not publicly available for distribution.
The number of models in this collection with mutations at the listed site;
may include models that are not publicly available for distribution.
GeneChrStartEndRefAltcDNA ChangeCodon ChangeProtein ChangeTVAF Gene Mutation Freq. Site Mutation Freq.Most Severe EffectAll EffectsMutation ImpactTranscript IDClinVar Clinical SignificanceCOSMIC IDgnomAD Non-Cancer AFdbSNP IDGene Mutation Freq.Site Mutation Freq.Transcript IDClinVar Clinical SignificanceCOSMIC IDdbSNP ID
AKAP9chr79202286492022864AAAACc.4004_4006dupaaa/aAACaap.K1335_L1336insQ0.5795035In-frame InsertionIn-frame InsertionMODERATEENST00000356239.8

COSV62337888
rs10644111
5035ENST00000356239.8COSV62337888rs10644111
ARID1Bchr6157190043157190043GCc.4064G>CaGt/aCtp.S1355T0.953374Missense VariantMissense VariantMODERATEENST00000636930.2

COSV104368469

374ENST00000636930.2COSV104368469
ATRchr3142469495142469495ACc.6394T>GTat/Gatp.Y2132D0.531134Missense VariantMissense VariantMODERATEENST00000350721.9
Benign/Likely_benign
COSV63384218
0.003051310000rs28910273
134ENST00000350721.9Benign/Likely_benignCOSV63384218rs28910273
BARD1chr2214780778214780799GTGGTGAAGAACATTCAGGCAAGc.1075_1095delTTGCCTGAATGTTCTTCACCA/-p.L359_P365del0.955347In-frame DeletionIn-frame DeletionMODERATEENST00000260947.9

COSV53608540
rs28997575
347ENST00000260947.9COSV53608540rs28997575
BCL9chr1147619827147619827ATc.1672A>TAgc/Tgcp.S558C0.454111Missense VariantMissense VariantMODERATEENST00000234739.8



111ENST00000234739.8
BCLAF1chr6136276251136276251GAc.1274C>TaCt/aTtp.T425I0.43944Missense VariantMissense VariantMODERATEENST00000531224.6


rs61757627
44ENST00000531224.6rs61757627
BCLAF1chr6136278195136278195GAc.686C>TcCt/cTtp.P229L0.10644Missense VariantMissense VariantMODERATEENST00000531224.6

COSV104666285
0.000080251400rs753799977
44ENST00000531224.6COSV104666285rs753799977
CDH11chr166498833164988331CTc.825G>AatG/atAp.M275I0.71762Missense VariantMissense VariantMODERATEENST00000268603.9
Benign
COSV51754932
0.196252000000rs1130821
62ENST00000268603.9BenignCOSV51754932rs1130821
CIITAchr161090907010909070AGc.2702A>GcAg/cGgp.Q901R0.9568584Missense VariantMissense VariantMODERATEENST00000618327.4
Benign

0.983235000000rs7197779
8584ENST00000618327.4Benignrs7197779
CLTCL1chr221923468819234688CTc.988G>AGag/Aagp.E330K0.963194Missense VariantMissense VariantMODERATEENST00000427926.6
Likely_pathogenic

0.000485627000rs199652160
194ENST00000427926.6Likely_pathogenicrs199652160
COL1A1chr175018596550185965ATc.4061T>AtTc/tAcp.F1354Y0.484111Missense VariantMissense VariantMODERATEENST00000225964.10



111ENST00000225964.10
CREB3L2chr7137928167137928170CTGGCc.299_301delaCCAgt/agtp.T100del0.9384949In-frame DeletionIn-frame DeletionMODERATEENST00000330387.11

COSV57791862
rs3217268
4949ENST00000330387.11COSV57791862rs3217268
ERCC2chr194535166145351661TGc.2251A>CAag/Cagp.K751Q0.3614846Missense VariantMissense VariantMODERATEENST00000391945.10
Benign/Likely_benign
COSV67266431
0.322955000000rs13181
4846ENST00000391945.10Benign/Likely_benignCOSV67266431rs13181
FBXW7chr4152326139152326139ACc.1511T>GgTc/gGcp.V504G0.98354Missense VariantMissense VariantMODERATEENST00000281708.10



54ENST00000281708.10
FLT4chr5180603322180603322CTc.3962G>AcGg/cAgp.R1321Q0.94124Missense VariantMissense VariantMODERATEENST00000261937.11
Benign/Likely_benign
COSV56126176
0.008583970000rs79620092
124ENST00000261937.11Benign/Likely_benignCOSV56126176rs79620092
CNV


Histology Information for Model: BCM-15029

Patient

PDX


Metastasis Information for Model: BCM-15029
 
Patient
PDX
Abdomen
Abdominal cavity
Adrenal Gland
Anterosuperior mediastinum
Ascites
Axillary Lymph Node
Bone
Brain
CTC
Chest
Chest wall
Contralateral Breast
Fallopian tubes
Head
Hilar Node
Hip
Kidney
Leg bone
Leptomeninges
Liver
Lung
Lymph Node
Mediastinum
Metastasis Pleura
Neck
None
Other
Ovary
Pancreas
Paratracheal adenopathy
Pericardium
Peritoneal cavity
Peritoneum
Pleura
Pleural cavity
Pleural effusion
Posterior cervical nodes
Pulmonary
Retrocrural Lymph Node
SVC node
Sacral Spine
Skin
Spine
Spleen
Thymus

Patient Treatment Information for Model: BCM-15029

Event IdTreatmentTreatment SettingAge at StartAge at EndDurationClinical ResponsePathologic ResponseReason Stopped
10Cyclophosphamide,Doxorubicin,Radiation Therapy (RT)Adjuvant46.8947.56245 daysNot ReportedNot ReportedTreatment Completed
25Carboplatin, DocetaxelNeoadjuvant63.0463.2784 daysPartial ResponsePartial ResponseSide Effects














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