Model Details

Patient Information for Model: BCM-15003

Patient Information
Clinical Timeline

Color Keys:
 
 Positive
 
 Negative
 
 N/A

Clinical Information at Collection
Clinical Biomarkers/Mutations at Collection
Pathology Information at Collection

Model Information for Model: BCM-15003

Model Details - Initial Implantation of Patient Tissue
Biomarkers & Mutations
Model Details - Acceptable Conditions for Passaging
Mutations (Cancer Gene Census List)

The number of models in this collection with mutations in the listed gene;
may include models that are not publicly available for distribution.
The number of models in this collection with mutations at the listed site;
may include models that are not publicly available for distribution.
GeneChrStartEndRefAltcDNA ChangeCodon ChangeProtein ChangeTVAF Gene Mutation Freq. Site Mutation Freq.Most Severe EffectAll EffectsMutation ImpactTranscript IDClinVar Clinical SignificanceCOSMIC IDgnomAD Non-Cancer AFdbSNP IDGene Mutation Freq.Site Mutation Freq.Transcript IDClinVar Clinical SignificanceCOSMIC IDdbSNP ID
ABL1chr9130878451130878451GTc.1307G>TgGc/gTcp.G436V0.23691Missense VariantMissense VariantMODERATEENST00000318560.6



91ENST00000318560.6
AKAP9chr79202286492022864AAAACc.4004_4006dupaaa/aAACaap.K1335_L1336insQ0.55035In-frame InsertionIn-frame InsertionMODERATEENST00000356239.8

COSV62337888
rs10644111
5035ENST00000356239.8COSV62337888rs10644111
ARchrX6754531667545328TGCAGCAGCAGCATc.228_239delctGCAGCAGCAGCAg/ctgp.Q77_Q80del0.88483In-frame DeletionIn-frame DeletionMODERATEENST00000374690.9

COSV65960938

483ENST00000374690.9COSV65960938
ATRXchrX7768247177682471CGc.2785G>CGag/Cagp.E929Q0.9865956Missense VariantMissense VariantMODERATEENST00000373344.10
Benign

rs3088074
5956ENST00000373344.10Benignrs3088074
AXIN2chr176555847365558473GAc.148C>TCct/Tctp.P50S0.044111Missense VariantMissense VariantMODERATEENST00000307078.10
Benign
COSV61057354
0.474888000000rs2240308
111ENST00000307078.10BenignCOSV61057354rs2240308
CASP9chr11552411815524118GAc.83C>TgCc/gTcp.A28V0.9131Missense VariantMissense VariantMODERATEENST00000333868.10
Benign
COSV61600760
0.503620000000rs1052571
131ENST00000333868.10BenignCOSV61600760rs1052571
CDH11chr166498833164988331CTc.825G>AatG/atAp.M275I0.44862Missense VariantMissense VariantMODERATEENST00000268603.9
Benign
COSV51754932
0.196252000000rs1130821
62ENST00000268603.9BenignCOSV51754932rs1130821
CIITAchr161090907010909070AGc.2702A>GcAg/cGgp.Q901R0.9698584Missense VariantMissense VariantMODERATEENST00000618327.4
Benign

0.983235000000rs7197779
8584ENST00000618327.4Benignrs7197779
CREB3L2chr7137928167137928170CTGGCc.299_301delaCCAgt/agtp.T100del0.5234949In-frame DeletionIn-frame DeletionMODERATEENST00000330387.11

COSV57791862
rs3217268
4949ENST00000330387.11COSV57791862rs3217268
DAXXchr63332050833320508CTc.1123G>AGtc/Atcp.V375I0.06442Missense VariantMissense VariantMODERATEENST00000374542.10
Benign
COSV105853115
0.001283900000rs61737694
42ENST00000374542.10BenignCOSV105853115rs61737694
ECT2Lchr6138876472138876472GAc.1579G>AGaa/Aaap.E527K0.982181Missense VariantMissense Variant; Splice Region VariantMODERATEENST00000541398.6
not_provided
COSV100871781
0.277428000000rs1529151
181ENST00000541398.6not_providedCOSV100871781rs1529151
ERCC2chr194535166145351661TGc.2251A>CAag/Cagp.K751Q0.964846Missense VariantMissense VariantMODERATEENST00000391945.10
Benign/Likely_benign
COSV67266431
0.322955000000rs13181
4846ENST00000391945.10Benign/Likely_benignCOSV67266431rs13181
ETV6chr121186956211869562TCc.602T>CcTc/cCcp.L201P0.23911Missense VariantMissense VariantMODERATEENST00000396373.9
Benign/Likely_benign
COSV67148666
0.004871210000rs145477191
11ENST00000396373.9Benign/Likely_benignCOSV67148666rs145477191
FAM135Bchr8138153029138153030TGCAc.1445_1446invcCA/cTGp.P482L0.9823529Missense VariantMissense VariantMODERATEENST00000395297.6


rs71505459
3529ENST00000395297.6rs71505459
FANCEchr63545585435455854ACc.356A>CcAg/cCgp.Q119P0.41641Missense VariantMissense VariantMODERATEENST00000229769.3
Uncertain_significance
COSV57691637
0.000063320500rs781123077
41ENST00000229769.3Uncertain_significanceCOSV57691637rs781123077
CNV


Histology Information for Model: BCM-15003

Patient

PDX


Metastasis Information for Model: BCM-15003
 
Patient
PDX
Abdomen
Abdominal cavity
Adrenal Gland
Anterosuperior mediastinum
Ascites
Axillary Lymph Node
Bone
Brain
CTC
Chest
Chest wall
Contralateral Breast
Fallopian tubes
Head
Hilar Node
Hip
Kidney
Leg bone
Leptomeninges
Liver
Lung
Lymph Node
Mediastinum
Metastasis Pleura
Neck
None
Other
Ovary
Pancreas
Paratracheal adenopathy
Pericardium
Peritoneal cavity
Peritoneum
Pleura
Pleural cavity
Pleural effusion
Posterior cervical nodes
Pulmonary
Retrocrural Lymph Node
SVC node
Sacral Spine
Skin
Spine
Spleen
Thymus

Patient Treatment Information for Model: BCM-15003

Event IdTreatmentTreatment SettingAge at StartAge at EndDuration
12[Docetaxel, Cyclophosphamide]Adjuvant66.6666.8569 days
14[Radiation Therapy (RT)]Adjuvant66.9166.9929 days














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